{"text_format":"3","workbook":"xlsx","n_sheets":1,"sheets":["Sheet1"],"read":"whole","date_system":"1900"}

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["Supplementary information"]
[]
["Table 1.  List of RNA Sequencing (RNA-Seq) libraries."]
["Chromosome","Accession ID","Strand","Unigene ID","UniGene Description","GenBank Description","cDNA length","Chromosome Start","Chromosome End","Chromosome Position","Reference Sequence","B-SNP","Y-SNP","L-SNP","D-SNP","B-Depth","Y-Depth","L-Depth","D-Depth","B-Synominus","Y-Synominus","L-Synominus","D-Synominus","B-ReMark","Y-ReMark","L-ReMark","D-ReMark","Flanking Sequence"]
["chr1","DQ530369","+","Ssc.55956"," Sus scrofa plasminogen mRNA, complete cds ","Sus scrofa plasminogen mRNA, complete cds.",2768,8079899,8127321,8120372,"A","A > G83 ","---","Non-Syn I > V","---","Non-Syn I > V","Non-Syn I > V","---","---","---","---","---","---","---","---","---","---","ACGTCACGGATGAGCAGGGCAGTCAAGTGTAACATTTGGTGTTGTCCTTTCAGCCCTGCC[A/G]TCATCACTGACAAGGTAATTCCGGCTTGTCTGCCAACCCCGAACTATGTGGTCGCCGACC"]
["chr1","DQ530369","+","Ssc.55956"," Sus scrofa plasminogen mRNA, complete cds ","Sus scrofa plasminogen mRNA, complete cds.",2768,8079899,8127321,8115591,"C","C > T24 ","---","---","C > T101 ",64,"---","---",210,"Non-Syn H > Y","---","---","Non-Syn H > Y","---","---","---","---","AGGGTGGTAGGTGGGTGCGTGTCCATCCCACACTCCTGGCCCTGGCAAATTAGCCTTCGA[C/T]ACAGGTAACAGCATTTCCAGAAACAATTTGTTCCATCTTTTCTGTAAGCCCTGCAAACCC"]
["chr1","DQ530369","+","Ssc.55956"," Sus scrofa plasminogen mRNA, complete cds ","Sus scrofa plasminogen mRNA, complete cds.",2768,8079899,8127321,8099615,"T","---","---","T > C33 ","T > C35 ","---","---",43,85,"---","---","Non-Syn Y > H","Non-Syn Y > H","---","---","---","---","GAGGTGAGGTGGGATTACTGCAAGATACCGTCCTGTGGGTCCTCCACGACATCCACGGAG[T/C]ATCTGGATGCCCCCGGTGAGAAAGGGCAAGGGGCGCTTCCTGGGGGCTCCCCATGTTCTA"]
["chr1","M36927","-","Ssc.33496"," Pig plasma gelsolin mRNA, 3' end ","Pig plasma gelsolin mRNA, 3' end.",2446,274833030,274840613,274839705,"T","T > C64 ","---","---","---",92,"---","---","---","Non-Syn * > Q","---","---","---","---","---","---","---","ACTCTGCCATTGGTGCATCTGTCCCTGCTGCCTGGCACTCACCTTGTACTTGAGACCAGA[T/C]TTGAAGTAGCCAAGGAAGGTGGCTGACTCGAAGCCCTGGACCTCGCGGTGCTGCACGGCC"]
["chr1","M36927","-","Ssc.33496"," Pig plasma gelsolin mRNA, 3' end ","Pig plasma gelsolin mRNA, 3' end.",2446,274833030,274840613,274833185,"T","T > G72 ","---","---","---",87,"---","---","---","Non-Syn S > A","---","---","---","---","---","---","---","CTGGAAGAGTCTCTGCACCGCCACTTCGTTGGGTACCACGTGCTTGAATCCTGATGCCAC[T/G]CCTCCTTTCTGTTGGTCAAGGAGACAGCGTTAGTCTGGGGAACAGGCCTGGGGAAGCAGG"]
["chr1","M36927","-","Ssc.33496"," Pig plasma gelsolin mRNA, 3' end ","Pig plasma gelsolin mRNA, 3' end.",2446,274833030,274840613,274839729,"T","T > C119 ","---","---","---",195,"---","---","---","Non-Syn S > P","---","---","---","---","---","---","---","CTGCTGCCTGGCACTCACCTTGTACTTGAGACCAGATTTGAAGTAGCCAAGGAAGGTGGC[T/C]GACTCGAAGCCCTGGACCTCGCGGTGCTGCACGGCCCGACCGTTCAGGTAGTCATCCAGC"]
["chr1","M36927","-","Ssc.33496"," Pig plasma gelsolin mRNA, 3' end ","Pig plasma gelsolin mRNA, 3' end.",2446,274833030,274840613,274839810,"T","T > C83 ","---","---","---",153,"---","---","---","Non-Syn S > P","---","---","---","---","---","---","---","CGGTGCTGCACGGCCCGACCGTTCAGGTAGTCATCCAGCTGCACGGTGAAGATGGCAGC[T/C]GCCCCGCTCTCATCCTGGCTGCATTCATTGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNN"]
["chr1","AY426609","-","Ssc.26324"," Sus scrofa iodotyrosine dehalogenase 1 (DEHAL1) mRNA, complete cds ","Sus scrofa iodotyrosine dehalogenase 1 (DEHAL1) mRNA, complete cds.",1170,16565064,16581775,16569215,"C","---","---","C > A83 ","C > A25 ","---","---",105,48,"---","---","Non-Syn Y > *","Non-Syn Y > *","---","---","---","---","CAGGTCTGTGACCCATCGAGGTCCCATCCTTTTCAGGTAGTTTATTTCCTCTTCCTCCTN[C/A]ATGATTTCCCGAATCCTATGCTTCACGTCCGGGTCTTTCACAACCACAAAAGTCCAGGNN"]
["chr1","AY426609","-","Ssc.26324"," Sus scrofa iodotyrosine dehalogenase 1 (DEHAL1) mRNA, complete cds ","Sus scrofa iodotyrosine dehalogenase 1 (DEHAL1) mRNA, complete cds.",1170,16565064,16581775,16569241,"C","---","---","C > T33 ","---","---","---",92,"---","---","---","Non-Syn H > Y","---","---","---","---","---","TCCTTTTCAGGTAGTTTATTTCCTCTTCCTCCTNCATGATTTCCCGAATCCTATGCTTCA[C/T]GTCCGGGTCTTTCACAACCACAAAAGTCCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN"]
["chr1","FJ436379","-","Ssc.19105"," Sus scrofa hepatic lipase (LIPC) mRNA, complete cds ","Sus scrofa hepatic lipase (LIPC) mRNA, complete cds.",1624,117434596,117479204,117474006,"C","---","---","C > T30 ","---","---","---",76,"---","---","---","Non-Syn R > *","---","---","---","---","---","ATCAGGCATGGTTACCTGTAATTCTCCCAATCTTGTGCTTTCTGCCCATGTAACTGCCAG[C/T]GAATCCGGCGACGTGTGCACCCAGGCTGTACCCAATTAGATGAACCTTGCTTGGAGAAAA"]
["chr1","FJ436379","-","Ssc.19105"," Sus scrofa hepatic lipase (LIPC) mRNA, complete cds ","Sus scrofa hepatic lipase (LIPC) mRNA, complete cds.",1624,117434596,117479204,117474991,"C","C > G36 ","---","Non-Syn P > A","---","Non-Syn P > A","Non-Syn P > A","---","---","---","---","---","---","---","---","---","---","gtagggTGAAGGTCAGGGCAGGTCTCACCTCCAGCCACCGGAGAAGAGCCTTGATCTCCC[C/G]GCCAACGAGGCGGGTGTTGCGGACAGCCATGGTATAGTGGTTGTGGGCCAGGGTGACCCA"]
["chr1","U87622","-","Ssc.14490"," Sus scrofa 15-oxoprostaglandin 13-reductase mRNA, complete cds ","Sus scrofa 15-oxoprostaglandin 13-reductase mRNA, complete cds.",1176,265254770,265271700,265254803,"G","G > C13 ","---","Non-Syn E > D","---","---","Non-Syn E > D","---","---","---","---","---","---","---","---","---","---","ACGAGTGAAAAACACCCACGAGACTCACCCGGGCATGCCCACCGTTCCCAGGGCCAAAGA[G/C]AGCGGTAGTGTGTCCGGCCACTCTGCCAGCAGCCTTTCCAAGTTTTTCCCATCAGAAATG"]
["chr1","U87622","-","Ssc.14490"," Sus scrofa 15-oxoprostaglandin 13-reductase mRNA, complete cds ","Sus scrofa 15-oxoprostaglandin 13-reductase mRNA, complete cds.",1176,265254770,265271700,265254830,"C","C > A41 ","---","---","---",68,"---","---","---","Non-Syn D > E","---","---","---","---","---","---","---","CCCGGGCATGCCCACCGTTCCCAGGGCCAAAGAGAGCGGTAGTGTGTCCGGCCACTCTGC[C/A]AGCAGCCTTTCCAAGTTTTTCCCATCAGAAATGGAGTGCGTGGTCCAGCCCAAAAGAGCC"]
["chr2","EF362780","+","Ssc.57969"," Sus scrofa serum amyloid A protein mRNA, partial cds ","Sus scrofa serum amyloid A protein mRNA, partial cds.",270,38261797,38262470,38261832,"G","G > A132 ","---","Non-Syn G > R","---","---","Non-Syn G > R","---","---","---","---","---","---","---","---","---","---","AGGGGCTAAAGACATGTGGAGAGCCTACTCGGACATGAGAGAAGCCAATTACAAAAATTC[G/A]GACAAGTACTTCCATGCCCGGGGCAACTATGATGCTGCCCAAAGGGGACCTGGGGGCGCC"]
["chr2","AF480162","+","Ssc.53702"," Sus scrofa eukaryotic elongation factor 1 gamma-like protein (eEF-1 gamma) mRNA, partial cds ","Sus scrofa eukaryotic elongation factor 1 gamma-like protein (eEF-1 gamma) mRNA, partial cds.",1322,7515046,7523957,7517109,"C","C > A252 ","---","---","---",499,"---","---","---","Non-Syn L > M","---","---","---","---","---","---","---","CTTGAAGACGAGGACTTTTCTGGTGGGCGAACGTGTGACGCTGGCTGACATCACAGTTGT[C/A]TGCACCCTGTTGTGGCTCTACAAACAGGTGAAGTTTCTGAAGAATCTGTGTTGGCAGAGG"]
["chr2","AY512561","+","Ssc.44917"," Sus scrofa delta-6 fatty acid desaturase mRNA, partial cds ","Sus scrofa delta-6 fatty acid desaturase mRNA, partial cds.",461,7839553,7852612,7839560,"G","---","---","---","G > C39 ","---","---","---",84,"---","---","---","Non-Syn R > P","---","---","---","---","CCCTATGTTCTGGCTCAACAGTCTGAGATCACCGAGGACTTCCGGGCCCTGAAGAAGAC[G/C]GCCGAGGACATGAACCTGTTCGAGAGCAACCACCTGTTCTTCTTCCTCCTCCTGGCCCAC"]
["chr2","AY512561","+","Ssc.44917"," Sus scrofa delta-6 fatty acid desaturase mRNA, partial cds ","Sus scrofa delta-6 fatty acid desaturase mRNA, partial cds.",461,7839553,7852612,7839581,"C","---","---","---","C > T54 ","---","---","---",134,"---","---","---","Non-Syn S > L","---","---","---","---","GTCTGAGATCACCGAGGACTTCCGGGCCCTGAAGAAGACGGCCGAGGACATGAACCTGTT[C/T]GAGAGCAACCACCTGTTCTTCTTCCTCCTCCTGGCCCACATCATTGTCATGGAAATTATT"]
["chr2","AB259649","-","Ssc.20728"," Sus scrofa C1-INH mRNA for C1 inhibitor, complete cds ","Sus scrofa C1-INH mRNA for C1 inhibitor, complete cds.",1721,11329675,11343663,11331411,"C","C > G154 ","---","---","C > G294 ",231,"---","---",898,"Non-Syn D > E","---","---","Non-Syn D > E","---","---","---","---","CTCCAGCTTATTCATGACAGCCTTGAAGACAGGGGCACTGAGGGCCTTCTCCATGTCTTC[C/G]AGACGGTGTTTCAAGGTCTGGGGCACCAGGATCACCAAGCTCAGGTTGTGAGACAGCTGC"]
["chr2","DQ367410","+","Ssc.18948"," Sus scrofa serum amyloid A2 mRNA, complete cds ","Sus scrofa serum amyloid A2 mRNA, complete cds.",393,38258754,38262478,38261873,"A","---","---","---","A > G110 ","---","---","---",304,"---","---","---","Non-Syn Q > R","---","---","---","---","AAGCCAATTACAAAAATTCGGACAAGTACTTCCATGCCCGGGGCAACTATGATGCTGCCC[A/G]AAGGGGACCTGGGGGCGCCTGGGCTGCTAAAGTGATCAGGTAGCAGGGGCCCTGGGGATG"]
["chr2","X78201","+","Ssc.1199"," S.scrofa 17beta-estradiol dehydrogenase mRNA ","S.scrofa 17beta-estradiol dehydrogenase mRNA.",2886,111755399,111844459,111808336,"G","---","G > A21 ","G > A21 ","G > A34 ","---",41,50,45,"---","Non-Syn S > N","Non-Syn S > N","Non-Syn S > N","---","---","---","---","GATTTTATTATTATTTAACATACGGTGTTTTTTGATTTCAGGTAGCTGTAGCCATACCTA[G/A]TAGACCTCCTGATGCTATACTTACAGATACCACCTCACTTAATCAGGTAAGATGGTATTT"]
["chr2","X78201","+","Ssc.1199"," S.scrofa 17beta-estradiol dehydrogenase mRNA ","S.scrofa 17beta-estradiol dehydrogenase mRNA.",2886,111755399,111844459,111829092,"A","A > G53 ","---","---","---",117,"---","---","---","Non-Syn I > V","---","---","---","---","---","---","---","AAAAATGGTGCTGGAAAAGTGTATCAGGGCCCTGCAAAAGGTTCTGCTGATGCAACCTTC[A/G]TACTTTCGGATGAAGTTTTCATGGAAGTAGTCTTGGGCAAGCTTGACCCTCAGAAGGTAA"]
["chr2","AB529450","-","---","---","Sus scrofa CDO1 mRNA for cysteine dioxygenase, type I, complete cds.",603,108664441,108676413,108676311,"C","C > T60 ","---","---","---",193,"---","---","---","Non-Syn R > C","---","---","---","---","---","---","---","GGTCGAACTTGGCGTACATGGCCCACTCCGCGGGGTCGCTCTCATAGGCTTCCATGACTG[C/T]CTGCACCTCCTCCACGTTGACCTCTTCGCTGGCGAAGAGCTGGTGCAGTATGCGGATCAG"]
["chr3","AY789513","-","Ssc.5832"," Sus scrofa Hsp27 mRNA, complete cds ","Sus scrofa Hsp27 mRNA, complete cds.",624,8503366,8504685,8503399,"C","---","---","---","C > T113 ","---","---","---",251,"---","---","---","Non-Syn R > *","---","---","---","---","GGGGCGGTGAGCAGCAGGGCGAAGGCCTTTACTTGGTTCCGGGCTTTTCCGACTTTCCAG[C/T]TTCTGTGCCCCCAAGCTGGGCCCGCGCCTCGAAAGTGACAGGGATGGTGATCTCTGCCGA"]
["chr3","AF028609","+","Ssc.11580"," Sus scrofa long-chain enoyl-CoA hydratase:3-hydroxyacyl-CoA dehydrogenase precursor (LCHYD-HAD) mRNA, nuclear gene encoding mitochondrial protein, complete cds ","Sus scrofa long-chain enoyl-CoA hydratase:3-hydroxyacyl-CoA dehydrogenase precursor (LCHYD-HAD) mRNA, nuclear gene encoding mitochondrial protein, complete cds.",2681,105296743,105341699,105304083,"G","---","---","---","---","Non-Syn R > K","---","---","---","---","---","---","---","---","---","---","---","AGGAACTGCATTCAGAGTTCATAGAAGTGATGAATGAAGTCTGGTCTAGCAGTCAGATCA[G/A]AAGCGCTGTCCTTATCTCATCAAAGCCAGGCTGCTTCATTGCAGGTGCTGATATCAAGTA"]
["chr4","EU616815","+","Ssc.73566"," Sus scrofa breed Meishan jumping translocation breakpoint (JTB) mRNA, complete cds ","Sus scrofa breed Meishan jumping translocation breakpoint (JTB) mRNA, complete cds.",726,99942014,99944229,99943976,"C","---","---","---","C > T33 ","---","---","---",107,"---","---","---","Non-Syn A > V","---","---","---","---","TTGCCCTTAGCTGCCGCTCAGCTCTGATGGAACAACACTTATTCTGGAAATTCGAAGGGG[C/T]TGTTGTAGGTGTGGCCTTGGTCTTTGCTTGCCTGGTCATCGTGCGTCAGCGACAACTGGA"]
["chr4","EU616815","+","Ssc.73566"," Sus scrofa breed Meishan jumping translocation breakpoint (JTB) mRNA, complete cds ","Sus scrofa breed Meishan jumping translocation breakpoint (JTB) mRNA, complete cds.",726,99754871,99757086,99756833,"C","---","---","---","C > T34 ","---","---","---",111,"---","---","---","Non-Syn A > V","---","---","---","---","TTGCCCTTAGCTGCCGCTCAGCTCTGATGGAACAACACTTATTCTGGAAATTCGAAGGGG[C/T]TGTTGTAGGTGTGGCCTTGGTCTTTGCTTGCCTGGTCATCGTGCGTCAGCGACAACTGGA"]
["chr4","EF683117","-","Ssc.56656"," Sus scrofa squalene epoxidase (sqle) mRNA, complete cds ","Sus scrofa squalene epoxidase (sqle) mRNA, complete cds.",2565,14332676,14364803,14339386,"C","---","C > A21 ","---","C > A24 ","---",53,"---",65,"---","Non-Syn C > *","---","Non-Syn C > *","---","---","---","---","GCCCTTTAGCAATTTTCTCCACAGTTTTATATCATTAAAAGCAACAGTCATTCCTCCTCC[C/A]GTGAGAGGATGCCTCATGTTATGTGCATCTCCCAAAAGAAGAACACCTAGAAAGAGAGAA"]
["chr4","AJ301324","-","Ssc.42791"," Sus scrofa mRNA for mitochondrial 2,4-dienoyl-CoA reductase, (DECR1 gene), clone 09B01aT3 ","Sus scrofa mRNA for mitochondrial 2,4-dienoyl-CoA reductase, (DECR1 gene), clone 09B01aT3.",265,47922702,47937363,47922794,"C","---","C > G63 ","C > G231 ","C > G92 ","---",159,301,254,"---","Non-Syn H > D","Non-Syn H > D","Non-Syn H > D","---","---","---","---","TGGACAGATGAGTTGTCATTCTTTTACCAATGCCAGTTCCTCCCCCGGTAATGAATGCTA[C/G]TTTTCCTTGAAAAGTATTTGGTGGCAGCATCACTTTTTGAAAGGGTGGGAAGGACTTAGA"]
["chr4","EU812512","-","Ssc.16157"," Sus scrofa breed Meishan C-reactive protein mRNA, complete cds ","Sus scrofa breed Meishan C-reactive protein mRNA, complete cds.",669,94316097,94322702,94316157,"T","T > G89 ","---","Non-Syn S > A","---","Non-Syn S > A","Non-Syn S > A","---","---","---","---","---","---","---","---","---","---","CTCAGGGCCACAGCTGGGGCTTGACATACACCTCGCCACTCATTTCATACCTCAGCGCCC[T/G]CCAGTTAAGGACATTAGGACTGAAGGTCCCACCAGCATAGACAGTGTTAATCTCCTCCGG"]
["chr4","AY233130","-","Ssc.1465"," Sus scrofa 2,4-dienoyl-CoA reductase (DECR) mRNA, partial cds ","Sus scrofa 2,4-dienoyl-CoA reductase (DECR) mRNA, partial cds.",890,47902601,47922883,47922794,"C","---","C > G63 ","C > G231 ","C > G92 ","---",159,301,254,"---","Non-Syn S > *","Non-Syn S > *","Non-Syn S > *","---","---","---","---","TGGACAGATGAGTTGTCATTCTTTTACCAATGCCAGTTCCTCCCCCGGTAATGAATGCTA[C/G]TTTTCCTTGAAAAGTATTTGGTGGCAGCATCACTTTTTGAAAGGGTGGGAAGGACTTAGA"]
["chr5","D89502","-","Ssc.55051"," Sus scrofa domestica mRNA for cytochrome P-450, complete cds ","Sus scrofa domestica mRNA for cytochrome P-450, complete cds.",1613,3025485,3030084,3026507,"G","G > A70 ","---","---","G > A186 ",166,"---","---",315,"Non-Syn R > H","---","---","Non-Syn R > H","---","---","---","---","TCATGGAGCACGGCCAAGGTGAAGGGCATGAGGGCCTGATCCTTTATCTCCGGTTGCCGC[G/A]CGTGCCCTATCACCTCATCGATTTCCTGTTGGACGCGTCCTGGAAAGACAAGTGTCCTCT"]
["chr5","AY349426","-","Ssc.1177"," Sus scrofa complement C1s mRNA, complete cds ","Sus scrofa complement C1s mRNA, complete cds.",2135,59788550,59797551,59788829,"T","T > C56 ","---","T > C209 ","---",89,"---",320,"---","Non-Syn C > R","---","Non-Syn C > R","---","---","---","---","---","CTCCAGCACAGATCATGTTATCAGTGAAAACAAAAGAACTTGTACCTATTCTGGGATTTG[T/C]CCCCTTGATCTCCTGGCATTTGTCTGAGGGAGCGACTGGCAACTTGGCCCCTCTGAGCTT"]
["chr5","GQ368242","-","---","---","Sus scrofa solute carrier family 25 member 3 (SLC25A3) mRNA, complete cds.",1086,80803156,80810542,80808752,"T","---","---","---","T > G59 ","---","---","---",75,"---","---","---","Non-Syn C > W","---","---","---","---","CATCTCAATACAAACCTGCATACGGCATTTCACTAAATCCAGAGGAACAACAGCAGTGTG[T/G]GTCAGACCACAACTTAAGACCCCACCAAAGCCACACAGTGCATAAAACTTCATGGAGCCA"]
["chr5","GU373680","-","---","---","Sus scrofa FK506 binding protein 4 (FKBP4) mRNA, complete cds.",1577,63189639,63197273,63191041,"A","A > G33 ","---","A > G15 ","A > G42 ",60,"---",43,76,"Non-Syn N > D","---","Non-Syn N > D","Non-Syn N > D","---","---","---","---","TCCGCTGCTGGCAGAGCGCCAACTGGGCCTTGGCGGCTTTGTTGCTGGGATAGAGCTGCA[A/G]GACCTTCTGGAAGTCAGCTCGAGCCAAGTCAAAGTCATTCACTGCCAGGTGGGCCTCTCC"]
["chr6","AF288821","+","Ssc.54355"," Sus scrofa ferritin L subunit mRNA, partial cds ","Sus scrofa ferritin L subunit mRNA, partial cds.",482,37763654,37764836,37764826,"C","---","---","---","C > G10830 ","---","---","---",15320,"---","---","---","Non-Syn P > R","---","---","---","---","GGTGAAGCTCATCAAGAAGATGGGCGACCACCTGACCAACCTGCGCAGGCTCTCTGGTCC[C/G]CAGGCTGGGCTGGGCGAGTACCTCTTCGAAAGGCTCACACTCAAGCACGACTAGGAATCT"]
["chr6","AF091607","-","Ssc.53940"," Sus scrofa clone gmus3g phosphoglucomutase 1 (PGM1) mRNA, partial cds ","Sus scrofa clone gmus3g phosphoglucomutase 1 (PGM1) mRNA, partial cds.",1003,104917544,104924041,104920959,"A","---","---","---","A > G21 ","---","---","---",49,"---","---","---","Non-Syn N > S","---","---","---","---","GAAAACACTTGCCAGGGCACAGGGCGTGGGCATTACCTGGGGGTCCTGGTAGATCTTGGC[A/G]AGGTCCTTCTCATAGCTGTCGATGTACAGTCGGATGGTGGCGCCCGCACTCCCAGTGCCG"]
["chr6","AF091607","-","Ssc.53940"," Sus scrofa clone gmus3g phosphoglucomutase 1 (PGM1) mRNA, partial cds ","Sus scrofa clone gmus3g phosphoglucomutase 1 (PGM1) mRNA, partial cds.",1003,104917544,104924041,104921061,"C","---","---","---","C > A13 ","---","---","---",42,"---","---","---","Non-Syn P > H","---","---","---","---","GCCCGCACTCCCAGTGCCGCTCAGTCGAAAGATGATGCGAGAACCATCTGCGAAAATGAC[C/A]CGCAAGCCCTGGAAAAGAGGACAGAGATTTTTTCTTCACATGCTGGAGGGATACTGAAGC"]
["chr6","DQ629153","+","Ssc.28411"," Sus scrofa COX6B (COX6B) mRNA, complete cds ","Sus scrofa COX6B (COX6B) mRNA, complete cds.",663,30327663,30331501,30329442,"C","C > T36 ","---","C > T29 ","C > T22 ",85,"---",91,50,"5`UTR","---","5`UTR","5`UTR","---","---","---","---","CCAGCCTCCACTGGGCCTGAGTGGACTGAGAGCCCTACCAGCATCCATTCTCTTTGGCCC[C/T]AGGAGTCAGCACTATGGCAGAAGACATCCAGACCAAAATCAAGAACTACCAGACAGCTCC"]
["chr6","X07382","+","Ssc.2375"," Pig mRNA for muscle phosphohexose isomerase (PHI; E.C. 5.3.1.9) ","Pig mRNA for muscle phosphohexose isomerase (PHI; E.C. 5.3.1.9).",1978,29450989,29454839,29454545,"A","A > T103 ","---","---","---",221,"---","---","---","Non-Syn K > M","---","---","---","---","---","---","---","ATGGCAGCAGCCCAGTGACTTCTCATGATTCTTCCACCAATGGGCTGATCAACTTCATCA[A/T]GCAGGAGCGTGAGGCCAGAAGCCAATAAACTCGTGCCCCACTGCAGTCCCCACTGTGACT"]
["chr6","AY705916","-","Ssc.142"," Sus scrofa medium-chain acyl-coA dehydrogenase (ACADM) mRNA, complete cds ","Sus scrofa medium-chain acyl-coA dehydrogenase (ACADM) mRNA, complete cds.",1758,96130798,96164788,96131298,"C","---","---","---","---","Non-Syn A > V","---","---","---","---","---","---","---","---","---","---","---","GTAGATCAGGTTCTAATTACTCAACAATTGTTCATATAGTGATTTTGTTAATTTTTATAC[C/T]GGCCAATGTGTTCACGGGCTATAATAATCCTTTGAATTTGTGCTGTACCTTCATAAATCT"]
["chr7","AY374469","+","Ssc.9992"," Sus scrofa electron transfer flavoprotein alpha subunit precursor (ETFA) mRNA, partial cds; nuclear gene for mitochondrial product ","Sus scrofa electron transfer flavoprotein alpha subunit precursor (ETFA) mRNA, partial cds; nuclear gene for mitochondrial product.",1224,61641780,61718157,61651548,"G","G > A24 ","---","---","---",42,"---","---","---","Non-Syn S > N","---","---","---","---","---","---","---","GAATTTTACTTGAACTCATAGTCTTTGTTTTGTTATGTATATCAATATGCACAGCATCAA[G/A]TGCGTCCCCAGTGGGGATATCAGAATGGCTTGACCAGAAATTAACAAAAAGTGATCGACC"]
["chr7","AB062757","-","Ssc.86"," Sus scrofa mRNA for carbonyl reductase/NADP-retinol dehydrogenase, complete cds ","Sus scrofa mRNA for carbonyl reductase/NADP-retinol dehydrogenase, complete cds.",880,81582116,81595222,81595160,"G","G > C29 ","---","---","---",72,"---","---","---","Non-Syn E > D","---","---","---","---","---","---","---","CTTGGGCCCCCGGGCACTCACCCGTCAGTGGAGGCTGTTACTAGTGCCACCTTATTCTC[G/C]AGCGGTTTTCGGCGCTCCACCCCGGTGCTGGCCATCCGCACCGACTTCCACGTCTGGGAA"]
["chr7","Z69585","-","Ssc.69976"," S.scrofa mRNA for glutathione S-transferase (clone M14) ","S.scrofa mRNA for glutathione S-transferase (clone M14).",973,135689200,135819094,135748203,"T","---","---","T > A241 ","T > A250 ","---","---",711,498,"---","---","Non-Syn M > K","Non-Syn M > K","---","---","---","---","ACGTAGTAGAGAAGTTCAACCAGCTGGATGTCAGCCCTGCTCAGCTTGTTGCCCACAAGG[T/A]AGTCTTGTCCATGGCTCTTCAACACCTGGCGGAGGGAGGGGTCAGCCCAGGAGCACAGGT"]
["chr7","EU143328","+","Ssc.42420"," Sus scrofa cell death-inducing DFFA-like effector B variant 1 (CIDE-B) mRNA, complete cds, alternatively spliced ","Sus scrofa cell death-inducing DFFA-like effector B variant 1 (CIDE-B) mRNA, complete cds, alternatively spliced.",650,81323884,81326457,81326224,"C","---","---","C > T16 ","---","---","---",33,"---","---","---","Non-Syn R > C","---","---","---","---","---","TCCCCACCCATCTGATTTCCTCCGGTCTCTGCCCTTCAGGGAGCTCCTCCGATGGGCCTC[C/T]GCACTGCTGCAAGGCCTGGGCCACGTCTTGCTGGGAATTTCCTCCACCATTCGTCATGCA"]
["chr7","AF324155","-","Ssc.3831"," Sus scrofa corticosteroid binding globulin precursor mRNA, complete cds ","Sus scrofa corticosteroid binding globulin precursor mRNA, complete cds.",1561,123932149,123951139,123934125,"C","---","---","---","C > T13 ","---","---","---",33,"---","---","---","Non-Syn P > S","---","---","---","---","GGTGGCTGAGCAAGTCCACAATGCCCATGTCCCCCAGGATGCTCCCGAGGTCATAGGCTC[C/T]AGAGATGGAGACCTTTGGGACGTACAGGTCCACCTGGCTGCTCGGAGTAAGCAGATGGGG"]
["chr7","EF625353","+","Ssc.26651"," Sus scrofa cytochrome P450 (CYP39A1) mRNA, complete cds ","Sus scrofa cytochrome P450 (CYP39A1) mRNA, complete cds.",2062,48483309,48564040,48494469,"C","---","C > G12 ","C > G22 ","---","---",35,40,"---","---","Non-Syn L > V","Non-Syn L > V","---","---","---","---","---","TTTTTAAAACTGCATGAGAAACTTTATGTCATGATGAAAGGGAAAATGGGGACTTTCAAC[C/G]TGTATCAATTCACTGGACAATTGACTGAAGAACTGCACAAACAGCTGGAGAATTTAGGCA"]
["chr7","EU402599","+","Ssc.20953"," Sus scrofa RING3 mRNA, partial cds ","Sus scrofa RING3 mRNA, partial cds.",2271,29532375,29537691,29535980,"G","G > C19 ","---","Non-Syn G > A","---","---","Non-Syn G > A","---","---","---","---","---","---","---","---","---","---","GGGAAAAAAAAGAGAAAAAGAAGAAACGGAAGGCAGAGAAGCATCGAGGCCGAGCTGGGG[G/C]TGATGAAGATGACAAAGGGCCTCGGGCACCCCGCCCATCTCAACCCAAGAAGTCCAAGAA"]
["chr7","AY489289","-","Ssc.19327"," Sus scrofa histone H1.3-like protein mRNA, complete cds ","Sus scrofa histone H1.3-like protein mRNA, complete cds.",669,22112382,22113048,22112616,"T","---","---","---","T > C43 ","---","---","---",70,"---","---","---","Non-Syn C > R","---","---","---","---","CCGCTGCCGGCTTCTTGGCTttcttgggggtcttcttggcggtcttctttggggtGGCTG[T/C]TCCGGTAGCCTTCTTGGGCTTCTTGGCTGCCCCAGCAGACTTCTTAGGCTTAGCTGCTCC"]
["chr7","AY489288","-","Ssc.19327"," Sus scrofa histone H1.3-like protein mRNA, complete cds ","Sus scrofa histone H1.3-like protein mRNA, complete cds.",669,22112382,22113048,22112651,"G","---","---","---","G > A25 ","---","---","---",58,"---","---","---","Non-Syn R > Q","---","---","---","---","ttggcggtcttctttggggtGGCTGTTCCGGTAGCCTTCTTGGGCTTCTTGGCTGCCCCA[G/A]CAGACTTCTTAGGCTTAGCTGCTCCCGCTTTCTTAGCTTTGGGCTTGGCTTCCCCGGTGG"]
["chr7","DQ291159","+","Ssc.10932"," Sus scrofa peroxisomal D3,D2-enoyl-CoA isomerase (PECI) mRNA, complete cds ","Sus scrofa peroxisomal D3,D2-enoyl-CoA isomerase (PECI) mRNA, complete cds.",1726,2295119,2311758,2302809,"C","---","---","---","C > G24 ","---","---","---",50,"---","---","---","Non-Syn T > S","---","---","---","---","TGAATCGGTGGGTTTTGCTTTCAGGAAGTGGGGACTATTACTGTAGCGGCAATGACCTGA[C/G]CAACTTCAAGGATATCCCCCCTGACAAAGTAGAGGAGAGAGCCCAGAGCAGCGCCGTCTT"]
["chr8","AY550058","-","Ssc.8609"," Sus scrofa scavenger receptor class B member 2 mRNA, partial cds ","Sus scrofa scavenger receptor class B member 2 mRNA, partial cds.",628,61266709,61276112,61268662,"A","A > G51 ","---","---","---",75,"---","---","---","Non-Syn C > W","---","---","---","mRNA Position t","---","---","---","GATCAGACCGAAGAACACACCGAGTGCCAGGATAATGTAGGGGATGTTGGTGATGACCAT[A/G]GTGGTGTTGACCACAGACTTCAGGCGACTTGCAGTCTCTTTATCAATGAGAACGCTCTGG"]
["chr8","U66371","-","Ssc.83"," Sus scrofa aminopeptidase A mRNA, complete cds ","Sus scrofa aminopeptidase A mRNA, complete cds.",3573,95963823,96121378,95964573,"T","---","---","---","T > G68 ","---","---","---",140,"---","---","---","Non-Syn F > C","---","---","---","---","CTGTTTTGTTTTAGCCATTCAATATTGTTTTTTACTGTTTCCAGTACTTGCTCTCTAGGT[T/G]TTTCTCCTGCTCCAGCTTCTGGATATCTTTTGAAAAAGCTCTCCATCTATAAAAGAGAAG"]
["chr8","M36787","-","Ssc.56897"," Pig liver albumin mRNA, 3' end ","Pig liver albumin mRNA, 3' end.",1893,58915736,58935224,58920087,"G","G > A11333 ","---","---","---",18283,"---","---","---","Non-Syn C > Y","---","---","---","---","---","---","---","GCATAGGTCTGCATGGAAGGTGAAGGTTCCCTCAACAAATTCTTTGGGTTTGTATGTTTC[G/A]TCTGGTGTCAGAGCAGAAAAGCAAGGCCGTCTGTTCACCAAGGACTCTGTGCAGCATTTG"]
["chr8","AY217034","-","Ssc.17221"," Sus scrofa microsomal triglyceride transfer protein large subunit (MTP) mRNA, complete cds ","Sus scrofa microsomal triglyceride transfer protein large subunit (MTP) mRNA, complete cds.",3941,103485923,103536558,103496265,"A","---","---","A > G78 ","---","---","---",111,"---","---","---","Non-Syn F > L","---","---","---","---","---","CACCACACTGATAGGGTCACTGGATGCTGACAGCATTTTGGACATCAAGTCACTGTATCC[A/G]TTGAAAAAAGTGACAGGTCTGAGCTGAACATCAAAGAGGAGGGGTGACAAGCCAGCATAG"]
["chr8","GQ266680","-","Ssc.17186"," Sus scrofa insulin-like growth factor binding protein 7 (IGFBP-7) mRNA, complete cds ","Sus scrofa insulin-like growth factor binding protein 7 (IGFBP-7) mRNA, complete cds.",1147,48075189,48147139,48146816,"T","---","---","---","T > C32 ","---","---","---",90,"---","---","---","Non-Syn F > S","---","---","---","---","CTCTTGCACACGCACACACCGCTTACGCCCGGGCCGCCGGCTGCTGCGCCCGCTTTACCC[T/C]TCCGCCTCTTGCGGCTCTTCACGCACTCCATGCCCGGCGCGCAGTGCCCCCTgccggcgc"]
["chr9","AF137374","+","Ssc.57913"," Sus scrofa membrane-bound folate binding protein mRNA, complete cds ","Sus scrofa membrane-bound folate binding protein mRNA, complete cds.",959,6258210,6264875,6264247,"A","A > T59 ","---","---","A > T194 ",98,"---","---",348,"Non-Syn N > I","---","---","Non-Syn N > I","---","---","---","---","ACCAGAAGTGGCGCAGAGAGCGGATCCTGAACGTGCCCCTCTGCAAAGAGGACTGTCAGA[A/T]CTGGTGGGAAGACTGCCGCACCTCCTACACCTGCAAGAGCAActggcacgagggctggaa"]
["chr9","AF137374","+","Ssc.57913"," Sus scrofa membrane-bound folate binding protein mRNA, complete cds ","Sus scrofa membrane-bound folate binding protein mRNA, complete cds.",959,6258210,6264875,6264297,"g","g > A30 ","---","---","g > A101 ",60,"---","---",230,"Non-Syn E > K","---","---","Non-Syn E > K","---","---","---","---","GACTGTCAGAACTGGTGGGAAGACTGCCGCACCTCCTACACCTGCAAGAGCAActggcac[g/A]agggctggaactggagctcaggtgagggcctgggtgggccggggtgggagctgggtgggt"]
["chr9","AF137374","+","Ssc.57913"," Sus scrofa membrane-bound folate binding protein mRNA, complete cds ","Sus scrofa membrane-bound folate binding protein mRNA, complete cds.",959,6258210,6264875,6264313,"g","---","---","---","g > C22 ","---","---","---",47,"---","---","---","Non-Syn S > T","---","---","---","---","GGGAAGACTGCCGCACCTCCTACACCTGCAAGAGCAActggcacgagggctggaactgga[g/C]ctcaggtgagggcctgggtgggccggggtgggagctgggtgggtgggtgggggtgtggat"]
["chr9","AF143229","+","Ssc.54006"," Sus scrofa apolipoprotein R precursor (APOR) mRNA, APOR1 allele, partial cds ","Sus scrofa apolipoprotein R precursor (APOR) mRNA, APOR1 allele, partial cds.",622,132346170,132358069,132356063,"T","T > C46 ","T > C104 ","Non-Syn F > S","Non-Syn F > S","Non-Syn F > S","Non-Syn F > S","---","---","---","---","---","---","---","---","---","---","AAGATGAGGTTGTATATAAATGTGATGAAGGATACACTCTGGTTGGAGAGGACAGACTCT[T/C]CTGTCGTTCTTCACGCTGGTCACCTGCAGCCCCTCGATGTAAAGGTAACTCCAGCTCCTT"]
["chr9","AF143229","+","Ssc.54006"," Sus scrofa apolipoprotein R precursor (APOR) mRNA, APOR1 allele, partial cds ","Sus scrofa apolipoprotein R precursor (APOR) mRNA, APOR1 allele, partial cds.",622,132346170,132358069,132357199,"C","C > G72 ","C > G205 ","Non-Syn H > D","Non-Syn H > D","Non-Syn H > D","Non-Syn H > D","---","---","---","---","---","---","---","---","---","---","GGAAAGTTATCTGTGGATCAGGATGAATATATTGAGTCTGAAAACGTCATTGTCCAGTGT[C/G]ACTCTGGCTATGGTTTGGTTGGTCCCAAAATTATCACTTGCACAGAAGACAGAACCTGGC"]
["chr9","AF143229","+","Ssc.54006"," Sus scrofa apolipoprotein R precursor (APOR) mRNA, APOR1 allele, partial cds ","Sus scrofa apolipoprotein R precursor (APOR) mRNA, APOR1 allele, partial cds.",622,132346170,132358069,132357200,"A","A > G70 ","A > G194 ","Non-Syn H > R","Non-Syn H > R","Non-Syn H > R","Non-Syn H > R","---","---","---","---","---","---","---","---","---","---","GAAAGTTATCTGTGGATCAGGATGAATATATTGAGTCTGAAAACGTCATTGTCCAGTGTC[A/G]CTCTGGCTATGGTTTGGTTGGTCCCAAAATTATCACTTGCACAGAAGACAGAACCTGGCA"]
["chr9","AF143229","+","Ssc.54006"," Sus scrofa apolipoprotein R precursor (APOR) mRNA, APOR1 allele, partial cds ","Sus scrofa apolipoprotein R precursor (APOR) mRNA, APOR1 allele, partial cds.",622,132346170,132358069,132357250,"A","A > G43 ","A > G95 ","Non-Syn R > G","Non-Syn R > G","Non-Syn R > G","Non-Syn R > G","---","---","---","---","---","---","---","---","---","---","GTCCAGTGTCACTCTGGCTATGGTTTGGTTGGTCCCAAAATTATCACTTGCACAGAAGAC[A/G]GAACCTGGCACCCACGGGTGCCCAAGTGTGAATGGGTAAGTGGCACAATCCAAGGAAGTT"]
["chr9","DQ660373","-","Ssc.53888"," Sus scrofa ribosomal protein S3 mRNA, complete cds ","Sus scrofa ribosomal protein S3 mRNA, complete cds.",811,9323653,9327436,9324885,"G","---","---","---","G > C36 ","---","---","---",110,"---","---","---","Non-Syn R > S","---","---","---","---","GTCAACGTAGTAGTTAACAGGGTCCCCACTGTGGATCATCACGCCATCCACAAACTTCAT[G/C]GATTTAGCTCTCTGTCCTCGAAGTTTCCCAGACACCACGACCTCGCAGCCTTTGGCCCCA"]
["chr9","AY682832","+","Ssc.51864"," Sus scrofa clone sus_zm43 succinate dehydrogenase complex subunit D precursor (SDHD) mRNA, complete cds ","Sus scrofa clone sus_zm43 succinate dehydrogenase complex subunit D precursor (SDHD) mRNA, complete cds.",1320,38652953,38666295,38665368,"G","G > A19 ","---","---","---",32,"---","---","---","Non-Syn A > T","---","---","---","---","---","---","---","ttttttttttAAATCTTTAGGGGCATTGGACAAGTCGTTACTGACTACGTGCGAGGGGAT[G/A]CACTGCAGAAAGCTGCCAAGGCAGGCCTTTTGGCGCTCTCGGCTTTCACCTTTGCTGGGC"]
["chr9","U14751","+","Ssc.4250"," Sus scrofa hyaluronidase mRNA, complete cds ","Sus scrofa hyaluronidase mRNA, complete cds.",1528,2597419,2606189,2598399,"A","A > G169 ","---","Non-Syn N > D","---","Non-Syn N > D","---","---","---","---","---","---","---","---","---","---","---","GGGCCGTCTGTGTGGGCGGGTCAAAACTGGACCCGGGGGTTAATCTCAGAGAGGTGGAAA[A/G]ACGCCCCCAGCTCCGTGGACGCCGCCTTCCGCCGTGGTCACGACAGAGTCTTTCTCATCC"]
["chr9","U14751","+","Ssc.4250"," Sus scrofa hyaluronidase mRNA, complete cds ","Sus scrofa hyaluronidase mRNA, complete cds.",1528,2597419,2606189,2601188,"G","G > A221 ","---","Non-Syn R > H","---","Non-Syn R > H","---","---","---","---","---","---","---","---","---","---","---","TCTCTGTGTCCCCCTCACCTATTCCTGCCCCAGGCCATGCACACAGGAACGCAACCCACC[G/A]TGGGGATGACCGCTGTAGCCCAGACCTGGTCTTGACTGCACTGCTGTCTGACAACCACGG"]
["chr9","M32031","+","Ssc.229"," Pig hepatic flavin-containing monooxygenase (FMO) mRNA, complete cds ","Pig hepatic flavin-containing monooxygenase (FMO) mRNA, complete cds.",2080,61615791,61649671,61645860,"T","T > A23 ","---","Non-Syn L > I","---","Non-Syn L > I","---","---","---","---","---","---","---","---","---","---","---","CTGCACATCTGCAGAAGCCAACTCTGGCTGTTATTGGCCTCATCAAACCCTTGGGCTCC[T/A]TACTACCCACAGGGGATACACAAGCTCGGTGGGCTGTTCGGGTCCTGAAAGGTAAATGCT"]
["chr9","EF537044","+","Ssc.21810"," Sus scrofa paraoxonase 3 transcript variant 1 (PON3) mRNA, complete cds, alternatively spliced ","Sus scrofa paraoxonase 3 transcript variant 1 (PON3) mRNA, complete cds, alternatively spliced.",973,70258772,70266785,70258855,"A","---","---","A > G106 ","---","---","---",128,"---","---","---","Non-Syn H > R","---","---","---","---","---","TTGTGAATCATCCCCACATGGAGTCCACTGTGGAGATATTTAAATTTGAGGAACAACAAC[A/G]TTCTCTGATACACCTGAAAACTATAAAACACGAGCTTCTCAAAAGGTATGGAATTTAAGT"]
["chr10","AY368183","+","Ssc.9229"," Sus scrofa mannose receptor C1 mRNA, partial cds ","Sus scrofa mannose receptor C1 mRNA, partial cds.",4949,42350451,42388064,42367780,"C","---","C > T46 ","---","C > T10 ","---",70,"---",31,"---","Non-Syn T > M","---","Non-Syn T > M","---","---","---","---","TGGCTTTATTAAATATGGTGAAAGTAGCTATTCTCTCACGAAATTAAAGCTACAATGGCA[C/T]GAAGCTGCTGATTATTGCAAGCTTCACTCTTCCCTTATTGCCAGCATTCTAGACCCCTAC"]
["chr10","AB000883","+","Ssc.53710"," Sus scrofa mRNA for epoxide hydrolase, complete cds ","Sus scrofa mRNA for epoxide hydrolase, complete cds.",1652,13958964,13974512,13968962,"T","T > G30 ","---","Non-Syn R > G","---","Non-Syn R > G","Non-Syn R > G","---","---","---","---","---","---","---","---","---","---","TACAAGCTGATGCTGCGGCTGGGCTTCCAGGAATTCTACCTTCAAGGCGGAGACTGGGGG[T/G]CCCTGATCTGCACCAACATGGCCCAGCTGGTGCCCAGGTGAGGTAGCTGTCAGGTGTGTG"]
["chr10","M86347","+","Ssc.5127"," Pig fructose kidney cortex 1,6-bisphosphatase (fbp) mRNA, complete cds ","Pig fructose kidney cortex 1,6-bisphosphatase (fbp) mRNA, complete cds.",1254,26696158,26859956,26859669,"A","A > G81 ","---","---","---",192,"---","---","---","Non-Syn M > V","---","---","---","---","---","---","---","GCAGCTGCTCTTGTTTTCCAGTTAAGACTGCTATACGAATGTAACCCGATGGCCTATGTC[A/G]TGGAGAAGGCAGGAGGACTGGCCACCACTGGGAAGGAAGCTGTGCTGGACATCGTTCCCA"]
["chr10","U38619","-","Ssc.1388"," Sus scrofa small intestine diadenosine tetraphosphatase mRNA, complete cds ","Sus scrofa small intestine diadenosine tetraphosphatase mRNA, complete cds.",859,30918466,30962547,30918845,"A","A > G38 ","---","---","A > G25 ",44,"---","---",38,"Non-Syn * > W","---","---","Non-Syn * > W","---","---","---","---","CTCGCGGGAGAGGCGGACCTCCACATCGTAGTCCTTTACTTCCGCCAGCCAGTAGATGAC[A/G]GTTTTAGGCTTCTCCCAGGCCACATAATTGAGCTCCTTTCTGAAGCCTTCAATGATGGTC"]
["chr12","U36916","+","Ssc.70057"," Sus scrofa porcine inhibitor of carbonic anhydrase (pICA) mRNA, complete cds ","Sus scrofa porcine inhibitor of carbonic anhydrase (pICA) mRNA, complete cds.",2942,37286305,37321815,37286461,"T","T > C124 ","---","---","---",393,"---","---","---","5`UTR","---","---","---","---","---","---","---","CAGGCGGAGGGCCAGGGGTGACCCACAGAAGAGGAGCCTTCCAGAGTCCCGATGTCATTG[T/C]CCTGCCCCCCTCTCTGCCCAGAGGTGTGACACCCACCCTCCCCTCCGCAGCTCCCGGGCC"]
["chr12","U36916","+","Ssc.70057"," Sus scrofa porcine inhibitor of carbonic anhydrase (pICA) mRNA, complete cds ","Sus scrofa porcine inhibitor of carbonic anhydrase (pICA) mRNA, complete cds.",2942,37286305,37321815,37286974,"A","A > G19 ","---","---","---",43,"---","---","---","5`UTR","---",{"$nulls":6},"AGGAGGTGCCTCACCCCAGGCCCCAGTCTCCTCCCCCAGGTCTGGTCCTTACATGATGCC[A/G]GGCTTGGAGCAGTAGCTGCTGGTCTTATAATAGTCCTGCACGAGTTTGCGCGGGATCCGC"]
["chr13","X75438","-","Ssc.70164"," S.scrofa mRNA for homolog of proline/arginine rich antibacterial peptides ","S.scrofa mRNA for homolog of proline/arginine rich antibacterial peptides.",804,26044641,26045581,26045518,"G","G > C84 ","---","Non-Syn R > P","---","---","Non-Syn R > P","---","---","---","---","---","---","---","---","---","---","GCACGAAGCACGGCCTCCCTGTAGCTGAGGGCCTGGGCGCTGGCCGAGGGCACCACGAGT[G/C]CCAGCAGCAGAAGCCACAGTGACCAGCGCCCCAGGCACAGGCTGGCCCTCTGGGTCTCCA"]
["chr13","AY902463","+","Ssc.54334"," Sus scrofa lipid droplet binding protein (CGI-58) mRNA, complete cds ","Sus scrofa lipid droplet binding protein (CGI-58) mRNA, complete cds.",1353,22891718,22939198,22924695,"A","A > C16 ","---","A > C15 ","---",43,"---",42,"---","Non-Syn N > H","---","Non-Syn N > H","---","---","---","---","---","CCTGTTCGTATATCTAATGGAAATAAAATATGGACACTGAAGCTCTCTCATAATATTTCA[A/C]ATAAGATTCCCCTTGTCCTCCTTCATGGTTTTGGAGGAGGTCTCGGACTTTGGGCACTGA"]
["chr13","DQ531718","+","Ssc.15842"," Sus scrofa pregnane X receptor variant 3 (PXR) mRNA, partial cds, alternatively spliced ","Sus scrofa pregnane X receptor variant 3 (PXR) mRNA, partial cds, alternatively spliced.",528,104975978,104979175,104976022,"A","---","---","---","A > G18 ","---","---","---",31,"---","---","---","Non-Syn K > E","---","---","---","---","GTTACCAGAGGTGCTTAGCAGTAGCCTCGAGATTCCAGAGTGTCTGCAGACTCCGTCGTC[A/G]AGGGAAGAAGCTGCCAAGTGGAGCAAGCTCAGGGAAGATCTGTGCTCAGTGAAACTCTCT"]
["chr13","AJ293582","+","Ssc.12528"," Sus scrofa mRNA for ribophorin I ","Sus scrofa mRNA for ribophorin I.",2089,59216681,59232941,59221591,"G","---","---","G > C33 ","---","---","---",51,"---","---","---","Non-Syn V > L","---","---","---","---","---","AGATTCTTCACAGTCACACTCCCAGTTGCTCTTGATCCTGGGGCCAAGATTTCAGTCACT[G/C]TGGAAACCGTTTACACCCACGTGCTTCAGCCATATCCAACACAGATCACCCAATCAGAGA"]
["chr13","FJ548763","+","---","---","Sus scrofa aminolevulinate delta-synthase 1 (ALAS1) pseudogene mRNA, complete sequence; nuclear gene for mitochondrial product.",1989,28804174,28818349,28811376,"G","---","---","G > A20 ","---","---","---",58,"---","---","---","Non-Syn S > T","---","---","---","---","---","TCAGTATGATCGTTTCTTTGAGAAGAAAATTGATGAGAAAAAAAATGACCATACATATCG[G/A]GTTTTCAAAACTGTGAACCGGAAGGCGCAGTGCTTCCCCATGGCGGATGACTATTCAGAC"]
["chr14","EU442570","-","Ssc.40304"," Sus scrofa lipase A mRNA, complete cds ","Sus scrofa lipase A mRNA, complete cds.",1200,106031931,106062898,106046527,"T","---","T > C11 ","---","---","---",31,"---","---","---","Non-Syn * > Q","---","---","---","---","---","---","CTTGAGAATGACCCACATAATACACTTGTTCTTGGCCAGTTTTATTCAGAATGAAGTTAA[T/C]TGAAGCTGGTAGGTCATAATTTGCCATCTCATCGTAGCTATAATCCAAAAAAAGGAAACC"]
["chr14","AB052258","+","Ssc.206"," Sus scrofa CYP2C49 mRNA for cytochrome P450 2C49, complete cds ","Sus scrofa CYP2C49 mRNA for cytochrome P450 2C49, complete cds.",1957,111627138,111667418,111649527,"C","---","C > T10 ","---","C > T92 ","---",33,"---",301,"---","Non-Syn L > F","---","Non-Syn L > F","---","---","---","---","CTCTTTTTCCATCAGTCTTACTTGTGTCTTATCAGCCAAAGTGCAGAAAGAGATTGACTC[C/T]GTGATTGAGAGACACCGAAGTCCTTGCATGCAGGACAGAAGCCGCATGCCCTATACAGAT"]
["chr14","DQ530510","+","Ssc.16332"," Sus scrofa multi-drug resistance associated protein 2 mRNA, partial cds ","Sus scrofa multi-drug resistance associated protein 2 mRNA, partial cds.",1449,115774004,115791367,115791345,"C","---","---","C > T34 ","C > T25 ","---","---",43,61,"---","---","Non-Syn T > M","Non-Syn T > M","---","---","---","---","TCCTGATCATGGATGAAGCCACTGCTGCGGTGGATCTAGAGACAGATCACCTCATCCAGA[C/T]GACCATCCAAACTGAGTTCTCCCACTGCACCACCATCACCATTGCCCACCGACTGCACAC"]
["chr14","M84639","-","Ssc.11992"," Pig complement cytolysis inhibitor mRNA, complete cds ","Pig complement cytolysis inhibitor mRNA, complete cds.",1632,11455351,11466559,11466464,"C","C > G30 ","---","---","---",57,"---","---","---","Non-Syn S > R","---","---","---","---","---","---","---","AGGACGGGGAGGGAGCATGTGAGGAGGCGCACAGGCTCACTTACCCTGGAGCTCTTTGTC[C/G]GAGATGGCCTTGTCCCCCAGCACCCAGGGGCCATTCTCCCAGGTCAGCAGCAGCCCCACC"]
["chr14","AY550259","-","Ssc.1031"," Sus scrofa 2'-5' oligoadenylate synthetase 1 (Oas1) mRNA, complete cds ","Sus scrofa 2'-5' oligoadenylate synthetase 1 (Oas1) mRNA, complete cds.",1501,39194609,39202536,39197790,"C","---","---","C > T93 ","---","---","---",143,"---","---","---","Non-Syn P > S","---","---","---","---","---","GCTTTAGGACTAATTCCAAAACAGTCTGAAATCCCTGAGCTGTGCTAAAATCTGTTTTCC[C/T]GCTTCCTTGCTCCCATGCATAGACTGTCAGGAGCTCCAGGGCATACTGTGGGGGCAGTTT"]
["chr15","FJ439668","-","Ssc.26347"," Sus scrofa 1-acylglycerol-3-phosphate O-acyltransferase 5 (AGPAT5) mRNA, complete cds ","Sus scrofa 1-acylglycerol-3-phosphate O-acyltransferase 5 (AGPAT5) mRNA, complete cds.",1172,34944077,34961071,34951693,"T","---","---","T > C30 ","---","---","---",31,"---","---","---","Non-Syn * > Q","---","---","---","---","---","CTTCTTTCCTCTGCCCTTTATCATCCATGGTCCCTTCGAAAGCCACTGTAACATCGTAAA[T/C]TGCATCTAAATAACTCTTCATAGAATCAAAAGCAACATGGGTTGCCTTTATTCTTGGTGT"]
["chr15","AY817664","-","Ssc.16743"," Sus scrofa fibronectin mRNA, partial cds ","Sus scrofa fibronectin mRNA, partial cds.",1080,111001359,111012723,111012712,"A","A > C24 ","---","Non-Syn E > D","---","---","Non-Syn E > D","---","---","---","---","---","---","---","---","---","---","GCTCTTCGACGCTCCAGTGGAGGGCACCGTTGTCCCCAGGGACAGGACGGCCAGCAGCAG[A/C]AGCCCGGGTCCTGGACCCCCGAGCATCTTGAGAAGGTGCGGGGATATAGACGCTCTAACC"]
["chr15","AY271355","+","Ssc.1241"," Sus scrofa heat shock 10kD protein mRNA, complete cds ","Sus scrofa heat shock 10kD protein mRNA, complete cds.",584,94913782,94915910,94915687,"C","---","---","C > T576 ","---","---","---",789,"---","---","---","Non-Syn W > C","---","---","---","---","---","TAGTTTTCTTCATTAATGGTTTCTCTGTTTGCAGGATTATTTCTTATTTAGAGATGGTGA[C/T]ATTCTTGGAAAATACGTAGACTGAAACAAGTCACTGTCTAATGGCATCACATGAAGCTGC"]
["chr16","EF113596","+","Ssc.8479"," Sus scrofa selenoprotein P (Sepp1) mRNA, complete cds ","Sus scrofa selenoprotein P (Sepp1) mRNA, complete cds.",2109,24814310,24824303,24817316,"C","C > T446 ","---","---","---",1479,"---","---","---","Non-Syn L > F","---","---","---","---","---","---","---","CTCTTTTCCAGGACGACCCCAGCAATGTGGAGAGGCCTGGGGCTGGCCCTGGCTCTCTGT[C/T]TCCTCTCTTGGGGAGGAACAGAGAGCCAGGGGAAAAGCTCCTTCTGTGAGCAACCTCCAG"]
["chr16","EF113596","+","Ssc.8479"," Sus scrofa selenoprotein P (Sepp1) mRNA, complete cds ","Sus scrofa selenoprotein P (Sepp1) mRNA, complete cds.",2109,24814310,24824303,24822904,"a","---","a > G967 ","a > G5206 ","---","---",2752,16398,"---","---","Non-Syn H > R","Non-Syn H > R","---","---","---","---","---","TGGCTACTGAGGAAAAAACAACTGAGGCTCCACAGCCTcatcaccatcatgatcaccatc[a/G]ccatcgccatcaccatcaccatcacGGGCACCAGCATCTTGGGAACGGTCATCTTTCAGA"]
["chr16","DQ333198","-","Ssc.5108"," Sus scrofa complement component C9 mRNA, complete cds ","Sus scrofa complement component C9 mRNA, complete cds.",2536,21882494,21918668,21889415,"T","T > A59 ","T > A324 ","T > A284 ","---",185,434,325,"---","Non-Syn S > T","Non-Syn S > T","Non-Syn S > T","---","---","---","---","---","AGTGAGCCTTGTTATTCATAGGATTTGAGTTTTCTTCGTTGGCAAGTTCTACATTTTTAC[T/A]TTTCAGCTGTTCAATTGCTTCGGTAGGTGTGAATTTTATAGTTAAATCTGCATTAAAATT"]
["chr16","AY368622","-","Ssc.19694"," Sus scrofa glutathione peroxidase 3 (GPX3) mRNA, partial cds ","Sus scrofa glutathione peroxidase 3 (GPX3) mRNA, partial cds.",348,69409946,69412237,69410557,"T","---","---","T > G21 ","---","---","---",37,"---","---","---","Non-Syn L > R","---","---","---","---","---","CCCGGTTCCTGTTTTCCAAATTGGTTGCAGGGGAAGCCCAGAATGACGAGGCCAAAGGGT[T/G]CAAACTCTTCCTGCAGTGCATTCAGTTCTGGGCCAGGACAGAGAGCAGAGATGGAGATGG"]
["chr16","AF339886","-","Ssc.11630"," Sus scrofa pituitary tumor-transforming protein (PTTG) mRNA, partial cds ","Sus scrofa pituitary tumor-transforming protein (PTTG) mRNA, partial cds.",363,60571741,60578205,60578202,"C","---","---","C > T12 ","C > T26 ","---","---",31,37,"---","---","Non-Syn R > *","Non-Syn R > *","---","---","---","---","CAGAGAAGGTTGTCTGTTTCTGTTTGAGGGGCCCATTAGTCTTTACTGACTTTTCTGTAG[C/T]TCTGTTGACAGTTCCCAAAGCCTTTCTGGCAGTTTTAGGAACAGCTGGTGGAGCATCAAA"]
["chr17","EU155140","-","Ssc.42516"," Sus scrofa solute carrier family 7 member 2 (SLC7A2) mRNA, complete cds ","Sus scrofa solute carrier family 7 member 2 (SLC7A2) mRNA, complete cds.",3147,5032181,5053054,5033342,"C","---","---","C > T23 ","---","---","---",37,"---","---","---","Non-Syn Q > *","---","---","---","---","---","GGTGTCTTTGGTGATGGTCATTTGCTTGAATGGCAGATTTTTCTTCGGCCGCTGTATGAA[C/T]GTTGTTTGAATGAGTATCTTCATCCTCATCCTCATCCCGTGAATTACCCTCCAGGCTGTG"]
["chr17","EF125869","-","Ssc.42516"," Sus scrofa cationic amino acid transporter-2 mRNA, partial cds ","Sus scrofa cationic amino acid transporter-2 mRNA, partial cds.",3028,5032181,5053005,5033342,"C","---","---","C > T23 ","---","---","---",37,"---","---","---","Non-Syn A > V","---","---","---","---","---","GGTGTCTTTGGTGATGGTCATTTGCTTGAATGGCAGATTTTTCTTCGGCCGCTGTATGAA[C/T]GTTGTTTGAATGAGTATCTTCATCCTCATCCTCATCCCGTGAATTACCCTCCAGGCTGTG"]