| Surface antigens | Not essential | Essential | Not essential |
| Fluorescence cell labeling | Required | Not required | Required |
| Cell purity | High | Medium | High |
| Concurrent categorization of diverse groups | Possible | Not possible | Possible |
| Categorizing by varied levels of expression | Possible | Not possible | Possible |
| Cell separation | Trypsinize | Magnetic | Complex |
| Positive selection | Possible | Possible | Possible |
| Negative selection | Possible | Possible (low purity) | Possible |
| Multi marker selection | Possible | Very limited | Possible |
| Operation specificity | High | High | High |
| Equipment price | High | Low | High |
| Technical proficiency | Highly required | Low required | Highly required |