Table 1. Phenotype-genotype antibiotic resistance patterns of E. coli and S. aureus

Location	Animal	Phenotypic resistance1)	Genotypic resistance
Escherichia coli			bla CMY	sul1	sul2	aadA	tetA	tetB
Witsand	Springbok	AMP(S), SF(R), ST(R), TE(R)	–	+	+	+	–	+
Witsand	Springbok	AMP(I), SF(I), ST(I), TE(S)	–	–	–	+	–	–
Witsand	Springbok	AMP(I), SF(I), ST(I), TE(S)	–	–	–	+	–	–
Witsand	Springbok2)	AMP(S), SF(S), ST(R), TE(S)	+	–	–	+	–	–
Witsand	Springbok2)	AMP(S), SF(S), ST(I), TE(S)	+	–	–	+	–	–
Modimolle	Impala	AMP(I), SF(I), ST(R), TE(S)	–	–	–	+	–	–
Modimolle	Impala	AMP(S), SF(S), ST(I), TE (S)	+	–	–	+	–	–
Modimolle	Impala2)	AMP(R), SF(S), ST(S), TE(S)	+	–	–	–	–	–
Modimolle	Impala2)	AMP(S), SF(S), ST(S), TE(S)	–	–	–	–	–	–
Modimolle	Impala2)	AMP(S), SF(S), ST(I), TE(S)	–	–	–	+	–	–
Wellington	Bontebok	AMP(R), SF(I), ST(I), TE(S)	+	–	–	+	–	–
Wellington	Bontebok	AMP(R), SF(S), ST(I), TE(S)	+	–	–	+	–	–
Wellington	Bontebok	AMP(R), SF(S), ST(I), TE(S)	+	–	–	+	–	–
Wellington	Bontebok	AMP(S), SF(S), ST(I), TE(S)	+	–	–	+	–	–
Wellington	Bontebok2)	AMP(R), SF(S), ST(S), TE(S)	+	–	–	–	–	–
Staphylococcus aureus			tetL	tetK	tetM	vanA	vanB	blaZ
Witsand	Springbok2)	TE(S), VA(S), P(R)	+	–	–	+	–	+
Witsand	Springbok2)	TE(S), VA(S), P(R)	+	–	–	–	–	+
Witsand	Springbok2)	TE(S), VA(S), P(R)	–	–	–	–	–	+
Witsand	Springbok2)	TE(S), VA(S), P(R)	–	–	–	–	–	+
Wellington	Bontebok2)	TE(S), VA(S), P(R)	–	–	–	–	–	+

AMP, ampicillin (blaCMY gene); SF, sulphonamide (sul1 and sul2 genes); ST, streptomycin (aadA gene); TE, tetracycline (tetA and tetB genes); TE, tetracycline (tetL, tetK and tetM genes); VA, vancomycin (vanA and vanB genes); P, penicillin (blaZ gene); S, susceptible; I, intermediate; R, resistant.
Meat samples (all others are fecal samples).